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@LoLab-MSM

Lopez Lab

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  1. pysb pysb Public

    Forked from pysb/pysb

    Python framework for Systems Biology modeling [Lopez Lab Mods]

    Python 6 8

  2. PyDREAM PyDREAM Public

    MT-DREAM(ZS) algorithm for model optimization, calibration, selection

    Python 49 32

  3. PyBILT PyBILT Public

    Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.

    Python 24 10

  4. simplePSO simplePSO Public

    Particle Swarm Optimization algorithm in Python

    Python 13 4

  5. MAGINE MAGINE Public

    Mechanism of Action Generation involving Network Analysis

    Jupyter Notebook 9 5

  6. pyvipr pyvipr Public

    Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML

    Jupyter Notebook 27 4

Repositories

Showing 10 of 67 repositories
  • simplePSO Public

    Particle Swarm Optimization algorithm in Python

    Python 13 4 1 0 Updated Apr 23, 2024
  • pydyno Public

    Tool that uses tropical algebra concepts to 'decompose' species trajectories in the protein-protein interactions that drive changes of concentration in time

    Jupyter Notebook 8 BSD-2-Clause 1 6 5 Updated Apr 10, 2024
  • pydream_it Public

    Read PySB models and generate a script for PyDREAM calibration

    Python 0 MIT 2 0 0 Updated Mar 25, 2024
  • pysb Public Forked from pysb/pysb

    Python framework for Systems Biology modeling [Lopez Lab Mods]

    Python 6 BSD-2-Clause 71 11 0 Updated Mar 8, 2024
  • Bayes-MMI Public
    Python 0 MIT 0 0 0 Updated Mar 1, 2024
  • Opt2Q Public
    Python 1 0 0 0 Updated Feb 9, 2024
  • SCLC-TF-Network-Analysis Public

    This repository provides source MATLAB codes for the structural analysis of Small Cell Lung Cancer Transcription Factor network using Dense Spanning Trees (DST) and Minimum Dense Spanning Trees (MDST)

    MATLAB 0 MIT 0 0 0 Updated Oct 31, 2023
  • pyvipr Public

    Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML

    Jupyter Notebook 27 MIT 4 6 17 Updated Mar 13, 2023
  • GPU_SSA_paper2023 Public
    Jupyter Notebook 0 0 0 0 Updated Mar 1, 2023
  • aEARM_cell_viability_calibration Public
    Python 0 0 0 0 Updated Jan 26, 2023
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