A code to generate atomic structure with symmetry

Free and open-source code package designed to perform PyMEEP FDTD simulations applied to Plasmonics (UBA+CONICET) [Buenos Aires, Argentina]

A Matlab code for tracking colloidal fluorescent nanoparticles.

The Otago Research Genetic Algorithm for Nanoclusters, Including Structural Methods and Similarity (Organisms) program is a genetic algorithm designed to globally optimise nanoclusters (also known as clusters or nanoparticles)

Python Code for Processing LAMMPS Data generated for two data types: LAMMPS trajectory file and LAMMPS dump files. Subsequently, the code involves post-processing of the data to give interfacial heat flux, temperature discontinuity and ultimately interfacial conductance using the atomistic nodal approach. Pythode code is also presented as a work…

"aggregate_gen" -- An efficient C++ code for generating fractal cluster of spheres

Desktop application for detection size and shape of gold nanoparticles and nanorods from TEM image (bachelor's project)

Iterative Particle Analysis Tool introduced in paper https://academic.oup.com/mam/advance-article/doi/10.1093/micmic/ozad036/7162605

PBM-CFD solvers for predicting particle size distributions

NanoTrackJ is an ImageJ/Fiji plugin to characterize the size of nanoparticles by its diffusion trajectories.

Paper on how to supress background while imaging gold nanorods through the use of the anti-Stokes emission.

This is a computational exercise for learning about silver nanoprisms and why their colour is related to their diameter. Runs in Google Colab and uses Python3. Designed for high school students.

Semi-supervised VAE for data with the rotational disorder

A molecular dynamics approach to study the permeation of nanoparticles through lipid bilayer

High throughput analysis of NTA data to evaulate particle interaction. Also gives results of general NTA analysis

PAR2 Activation and calcium signaling Reaction Model in PySB

project about measuring size and shape of gold nanoparticles and nanorods and image segmantation

C++ template library for Discrete Element Method (DEM) simulations

eNanoMapper TTL for ACS Nano paper