An object-oriented model of the workings of the human body written in java and scala
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Updated
Jan 22, 2018 - Java
An object-oriented model of the workings of the human body written in java and scala
Virtual population generation, fitting, and benchmarking.
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
Streaming over networks
Connecting nodes
Simulation of agents competing for resources with different strategies
4 dimensional model for neuronal modelling in Julia
Python toolkit for Bayesian parameter inference, model calibration, and model selection using Nested Sampling
A prototype of a probabilistic research model for a math professor. It is meant to simulate a white blood cell chasing a bacteria.
Code behind the work "Single Cortical Neurons as Deep Artificial Neural Networks", published in Neuron 2021
R language for Human Performance Analysis
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems
Code behind the work "Multiple Synaptic Contacts Combined with Dendritic Filtering Enhance Spatio-Temporal Pattern Recognition of Single Neurons", bioRxiv 2022
PAR2 Activation and calcium signaling Reaction Model in PySB
A Game Theoretic Approach For Rendering Immersive Experiences In The Metaverse
Mini project (5ECTS) as part of the MSc Biology (University of Groningen), aiming to increase the efficeincy and speed of DAISIE model simulations.
iCodon customizes gene expression based on the codon composition
Bayesian inference of stochastic cellular processes with and without memory in Python.
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