A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
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Updated
Feb 12, 2024 - Shell
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
A cool place to store your Hi-C
flexible suite of CLI tools for contact extraction (.pairs) from sequencing data (Hi-C, Micro-C and other chromosome capture methods)
Accurate and flexible loops calling tool for 3D genomic data.
nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
Using Particle Swarm Algorithm for chromosome three-dimensional structure construction
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
Processed data set of Miura et al., Nature Genetics, 2019
Data and the co-authored network I extracted for lab selection in 3D genome research field
Analysis of regulatory impacts of GWAS SNPs associated with psychiatric disorders and cognitive functioning.
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