Accurate and flexible loops calling tool for 3D genomic data.

Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

Chromatin loop caller using Topological Data Analysis based on Hi-C data

Chromatin Landscape Exploration, Analysis, and Research Tools

The repository contains the codes for the prediction of YY1 chromatin loops using densely connected neural network based on Kmer embeddings.

HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops