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Issues list

QUALIMAP_RNASEQ error simultaneous access on same dir bug Something isn't working
#1298 opened May 9, 2024 by redvoidling
Command not found bug Something isn't working
#1295 opened May 8, 2024 by me-orlov
1
NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES Segmentation fault bug Something isn't working
#1294 opened May 7, 2024 by fjosefdz
2
NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN: failed with exit status 140 and 102
#1292 opened May 2, 2024 by DollyCM
3
Replace nf-validation with nf-schema enhancement
#1290 opened Apr 30, 2024 by adamrtalbot
1
Pipe line Error with HiSAT2 Aligner bug Something isn't working
#1288 opened Apr 29, 2024 by merang2050
1
Validate FASTQs prior to running pipeline enhancement
#1281 opened Apr 10, 2024 by adamrtalbot
Improve/add UMI deduplication metrics enhancement
#1277 opened Apr 2, 2024 by ppericard
2
Add additional FastQC step after optional BBSplit and/or SortMeRNA enhancement
#1276 opened Mar 28, 2024 by ppericard
Two Bigwig files per sample are generated representing each strand enhancement
#1275 opened Mar 26, 2024 by drimran87
1
Qualimap assigns more reads to exonic regions than total reads in the sample bug Something isn't working
#1273 opened Mar 21, 2024 by ctuni
NFCORE_RNASEQ:RNASEQ:FASTQ_ALIGN_HISAT2:HISAT2_ALIGN (pituitary_stage3-1) terminated with an error exit status (1) bug Something isn't working
#1270 opened Mar 19, 2024 by hyBio
2
Custom config being ignored bug Something isn't working
#1268 opened Mar 15, 2024 by sklages
4
deseq2 missing bug Something isn't working
#1263 opened Mar 13, 2024 by mictadlo
Salmon --keepDuplicates by default enhancement
#1259 opened Mar 12, 2024 by adamrtalbot
2
extra_salmon_quant_args quote issue bug Something isn't working
#1257 opened Mar 11, 2024 by kdivilov
Make pipeline truly resumable enhancement
#1219 opened Feb 21, 2024 by aghr
1
invalid literal for int() with base 10: '0.79;logic_name=cpg' bug Something isn't working
#1215 opened Feb 16, 2024 by ZabalaAitor
Issue in NFCORE_RNASEQ:RNASEQ:QUANTIFY_PSEUDO_ALIGNMENT:TX2GENE (genome.filtered.gtf) bug Something isn't working
#1204 opened Jan 30, 2024 by alexmascension
2
Having issues similar to #1003 "FASTQ_SUBSAMPLE_FQ_SALMON:SALMON_INDEX is launched multiple times and fails" bug Something isn't working
#1203 opened Jan 30, 2024 by Jgarlan1
1
FASTP trimming Smart3-seq data removes all reads (UMI discard read2) bug Something isn't working
#1200 opened Jan 23, 2024 by mschubert
STAR biocontainer is incorrect (not 2.7.10a version) bug Something isn't working
#1198 opened Jan 22, 2024 by mauro-saporita
second and third columns meaning in tx2gene.tsv from star_salmon
#1193 opened Jan 16, 2024 by jdanaK
Trim_galore not found
#1192 opened Jan 15, 2024 by andrebolerbarros
1
GFF file regex enhancement
#1190 opened Jan 14, 2024 by roldanjg
@roldanjg
ProTip! Adding no:label will show everything without a label.