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Validate FASTQs prior to running pipeline #1281

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adamrtalbot opened this issue Apr 10, 2024 · 0 comments
Open

Validate FASTQs prior to running pipeline #1281

adamrtalbot opened this issue Apr 10, 2024 · 0 comments
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enhancement
Milestone
3.15.0

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@adamrtalbot
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Description of feature

Running FASTP or Trimgalore is a large overhead if you have corrupted FASTQ files. We could add FQ_LINT early in the pipeline to verify the FASTQ file integrity before running any larger processes. This would also produce a detailed report on FASTQ file validity.
@adamrtalbot adamrtalbot changed the title Add FQ_LINT to validate FASTQs prior to running pipeline Validate FASTQs prior to running pipeline Apr 10, 2024
@drpatelh drpatelh added this to the 3.15.0 milestone May 13, 2024
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3.15.0
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@adamrtalbot @drpatelh