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GFF file regex #1190

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roldanjg opened this issue Jan 14, 2024 · 1 comment
Open

GFF file regex #1190

roldanjg opened this issue Jan 14, 2024 · 1 comment
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@roldanjg
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Description of feature

Hi nf-core team,
I work with genomes from different species, and many times people use 'gff3' instead of 'gff' extension in the annotations file name, to differentiate GFF2 and GFF3 I guess. I had to modify the regex to include this possibility, so I'm about to propose a pull request to include that and so 'gff3' extension won't give a bad format error.

@roldanjg roldanjg self-assigned this Jan 14, 2024
@drpatelh drpatelh added this to the 3.15.0 milestone May 13, 2024
@drpatelh
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Linking PR here for posterity: #1191

It still needs some comments addressed, so I will leave this issue open for now.

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