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27 Open 43 Closed
27 Open 43 Closed
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Issues list

Stringtie and featurecounts results: counts_gene.txt has more rows than counts_transcript.txt bug Something isn't working
#265 opened Apr 19, 2024 by CHENAO-QIAN
pipeline terminating early bug Something isn't working
#264 opened Mar 13, 2024 by nick-youngblut
2
Pulling biocontainers:v1.2.0_cv1 Singularity image fails bug Something isn't working
#257 opened Oct 30, 2023 by pcrxn
3
Pairing between sample and genome is ignored for demultiplexed reads (cDNA mode) bug Something isn't working
#254 opened Aug 31, 2023 by nschan
2
modular version of the DNA protocol enhancement New feature or request
#252 opened Jul 27, 2023 by mvheetve
Process NFCORE_NANOSEQ:NANOSEQ:QCFASTQ_NANOPLOT_FASTQC:NANOPLOT (23046_LEC_R1) terminated with an error exit status (2) bug Something isn't working
#250 opened Jun 12, 2023 by gzentner
5
Add dorado as the basecaller enhancement New feature or request
#249 opened Jun 8, 2023 by bounlu
2
JAFFA error using docker in nf-core/nanoseq version 3.0.0 and 3.1.0 bug Something isn't working
#240 opened May 6, 2023 by criphg
8
JAFFAL pipeline crashes when singularity is used bug Something isn't working
#239 opened May 4, 2023 by marcDabad
1
Update m6anet to version 2 enhancement New feature or request
#237 opened Apr 24, 2023 by matthewstuartedwards
Parallelize nanopolish eventalign enhancement New feature or request
#236 opened Apr 23, 2023 by matthewstuartedwards
No profile for Apptainer (Singularity successor) enhancement New feature or request
#235 opened Apr 5, 2023 by paulmenzel
MultiQC report not triggered by FastQC input bug Something isn't working
#234 opened Mar 24, 2023 by ktrappe
Nanoplot output files clobber each other .. bug Something isn't working
#233 opened Mar 23, 2023 by benbfly
4
Nanopolish does not include the required HDF5 plugin and/or VBZ decompression bug Something isn't working
#231 opened Mar 17, 2023 by Eric-CH-Chen
7
To include profile "test" directRNA programs enhancement New feature or request
#230 opened Mar 16, 2023 by Eric-CH-Chen
make pycoQC run without basecalling/demultiplexing enhancement New feature or request
#199 opened Oct 19, 2022 by FranBonath
Samtool sort or indexing aborted due to an "unexpected error" bug Something isn't working
#198 opened Oct 19, 2022 by FranBonath
GraphMap2_Align Crash bug Something isn't working
#175 opened Apr 1, 2022 by DrOllyGomez
4 tasks done
2
parameters to use for the rapid barcode 96 kit bug Something isn't working
#160 opened Jan 25, 2022 by nick-youngblut
Error executing process > 'NFCORE_NANOSEQ:NANOSEQ:QCFASTQ_NANOPLOT_FASTQC:NANOPLOT bug Something isn't working
#141 opened Dec 9, 2021 by wdiao-zju
2
Nanoseq not pulling Deseq2 and Dexseq
#119 opened Sep 2, 2021 by AnunayS
Total alignments : 0 / featureCount Results
#115 opened Jun 26, 2021 by cagataykos
1
Skip_quantification problem
#106 opened Feb 7, 2021 by manburst
"/bin/bash: .command.run: Permission denied" with SELinux enabled
#74 opened Aug 31, 2020 by junaruga
25
ProTip! no:milestone will show everything without a milestone.