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Add dorado as the basecaller #249

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bounlu opened this issue Jun 8, 2023 · 2 comments
Open

Add dorado as the basecaller #249

bounlu opened this issue Jun 8, 2023 · 2 comments
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enhancement New feature or request

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@bounlu
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bounlu commented Jun 8, 2023

Description of feature

ONT now has a faster tool than guppy or bonito for basecalling called dorado. It is pretty stable and mature now. Please consider integrating it to nf-core/nanoseq pipeline if it does not breach EULA.
@bounlu bounlu added the enhancement New feature or request label Jun 8, 2023
@PanosProv
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I second this. It would be great if dorado is part of the next update of the nanoseq pipeline.

@weir12
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weir12 commented Jan 21, 2024

I third this. It would be great if dorado is part of the next update of the nanoseq pipeline.

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@bounlu @PanosProv @weir12