Skip to content

Issues: nf-core/hic

Include pairtools protocol
#162 opened May 5, 2023 by nservant
Open 3
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

31 Open 60 Closed
31 Open 60 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

What are the restriction enzymes name used by Arima?
#201 opened May 9, 2024 by RezwanCAAS
Reopening the split-fastq error bug Something isn't working
#198 opened Apr 30, 2024 by Krithika-Bhuvan
[Question] Mad-max filter
#193 opened Feb 27, 2024 by jeff-godwin
Improve multiQC report enhancement New feature or request
#190 opened Jan 26, 2024 by nservant
Add loop calling tools enhancement New feature or request
#189 opened Jan 26, 2024 by nservant
1
add calder2 module enhancement New feature or request
#188 opened Jan 26, 2024 by nservant version-2.2.0
NFCORE_HIC:HIC:CUSTOM_DUMPSOFTWAREVERSIONS (1) terminated with an error exit status (1) bug Something isn't working
#182 opened Oct 19, 2023 by aghr
1
4
java error bug Something isn't working
#180 opened Oct 13, 2023 by AlcaArctica
1
sort extreme large pairs files
#176 opened Aug 3, 2023 by andyyhchen
Put FastQ File Splitting in a Dedicated Process enhancement New feature or request
#164 opened May 17, 2023 by ieres-amgen
8
Include pairtools protocol enhancement New feature or request
#162 opened May 5, 2023 by nservant
4 of 5 tasks
version-2.2.0
3
Change bwt2_index input to take input tar/tar.gz file rather than path + base name enhancement New feature or request
#157 opened Apr 4, 2023 by IttaiEres
samplesheet check too stringent for header check bug Something isn't working
#152 opened Mar 7, 2023 by askol-lurie version-2.2.0
8
Chromap enhancement New feature or request
#134 opened Aug 14, 2022 by Johnsonzcode
update cooltools compartments enhancement New feature or request
#133 opened Jul 29, 2022 by nservant
1
bowtie2 indexes lost for genomes bigger than 4Gbp when --bwt2_index is not provided bug Something isn't working
#131 opened Jul 18, 2022 by oneillkza
1
singularity fails to pull the hic-1.3.0 container bug Something isn't working
#129 opened Jun 23, 2022 by Kevin-Brockers
3 of 4 tasks
Pipeline failure on second read during bowtie2_end_to_end bug Something isn't working
#128 opened Jun 17, 2022 by RenscoHogers
4 tasks done
Buffer underflow on -resume
#121 opened Mar 18, 2022 by syfobfx
perserve the qc pdf from hic pro enhancement New feature or request
#118 opened Feb 9, 2022 by yinshiyi
get_valid_interaction fails with exitcode 137 with --digestion arima bug Something isn't working
#113 opened Nov 10, 2021 by heuermh
4 tasks
6
conda environment error bug Something isn't working
#109 opened Sep 24, 2021 by erbon7
5
Input File Naming Convention bug Something isn't working
#92 opened Feb 24, 2021 by mxw010
1
design file enhancement New feature or request
#63 opened Jun 11, 2020 by nservant
reported bugs bug Something isn't working
#62 opened Jun 11, 2020 by nservant version-2.2.0
2
ProTip! Add no:assignee to see everything that’s not assigned.