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update cooltools compartments #133

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nservant opened this issue Jul 29, 2022 · 1 comment

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nservant commented Jul 29, 2022

Remove those steps from the compartment calling

cooltools genome binnify --all-names ${chrsize} ${resolution} > genome_bins.txt
cooltools genome gc genome_bins.txt ${fasta} > genome_gc.txt

nservant added the enhancement label

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nservant commented Jul 29, 2022

Add some test dataset
https://github.com/open2c/cooltools/tree/master/tests

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