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Reopening the split-fastq error #198

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Krithika-Bhuvan opened this issue Apr 30, 2024 · 0 comments
Open

Reopening the split-fastq error #198

Krithika-Bhuvan opened this issue Apr 30, 2024 · 0 comments
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@Krithika-Bhuvan
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Description of the bug

Reference to this: #71

Hello ! Reopening this issue . I'm using nf-core/hic v2.1.0-gfe4ac65 on our HPC and when i use this setting , the pipeline does not proceed to the fastqc step. No errors or anything. Just silent.
In addition to saying "split-fastq: true" in my YAML file, should i be adding any more parameters ?

Command used

nextflow run nf-core/hic -c nextflow.config -profile biowulf -params-file params1.yaml -resume

YAML file

input: 'sample1.csv'
outdir: './TDMSO_trim/'
genome: 'GRCh38'
digestion: 'arima'
save_interaction_bam: true
hicpro_maps: true
split_fastq: true

Command used and terminal output

slurm log


[+] Loading java 17.0.3.1  ... 
[+] Loading singularity  4.0.1  on cn0847 
[+] Loading nextflow  23.10.0 
[33mNextflow 23.10.1 is available - Please consider updating your version to it�(B�[m
N E X T F L O W  ~  version 23.10.0
Launching `https://github.com/nf-core/hic` [nice_perlman] DSL2 - revision: fe4ac65631 [master]


------------------------------------------------------
                                        ,--./,-.
        ___     __   __   __   ___     /,-._.--~'
  |\ | |__  __ /  ` /  \ |__) |__         }  {
  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                        `._,._,'
  nf-core/hic v2.1.0-gfe4ac65
------------------------------------------------------
Core Nextflow options
  revision                     : master
  runName                      : nice_perlman
  containerEngine              : singularity
  launchDir                    : /vf/users/03_nextflow_hic
  workDir                      : /vf/users/03_nextflow_hic/work
  projectDir                   : /home/user1/.nextflow/23.10.0/assets/nf-core/hic
  userName                     : user1
  profile                      : biowulf
  configFiles                  : /home/user1/.nextflow/23.10.0/assets/nf-core/hic/nextflow.config, /vf/users/03_nextflow_hic/nextflow.config, /vf/users/03_nextflow_hic/nextflow.config

Input/output options
  input                        : /data/03_nextflow_hic/sample1.csv
  outdir                       : ./TDMSO_trim/

Reference genome options
  genome                       : GRCh38
  fasta                        : /fdb/igenomes//Homo_sapiens/NCBI/GRCh38/Sequence/WholeGenomeFasta/genome.fa
  igenomes_base                : /fdb/igenomes_nf/
  bwt2_index                   : /fdb/igenomes//Homo_sapiens/NCBI/GRCh38/Sequence/Bowtie2Index/

Digestion Hi-C
  digestion                    : arima

DNAse Hi-C
  min_cis_dist                 : 0

Alignments
  bwt2_opts_end2end            : --very-sensitive -L 30 --score-min L,-0.6,-0.2 --end-to-end --reorder
  bwt2_opts_trimmed            : --very-sensitive -L 20 --score-min L,-0.6,-0.2 --end-to-end --reorder

Valid Pairs Detection
  max_insert_size              : 0
  min_insert_size              : 0
  max_restriction_fragment_size: 0
  min_restriction_fragment_size: 0
  save_interaction_bam         : true

Contact maps
  bin_size                     : 1000000
  hicpro_maps                  : true
  ice_filter_high_count_perc   : 0
  res_zoomify                  : null

Downstream Analysis
  res_dist_decay               : 250000
  tads_caller                  : insulation
  res_tads                     : 40000

Institutional config options
  config_profile_description   : Biowulf nf-core config
  config_profile_contact       : staff@hpc.nih.gov
  config_profile_url           : https://hpc.nih.gov/apps/nextflow.html

Max job request options
  max_cpus                     : 32
  max_memory                   : 400 GB
  max_time                     : 240 h

!! Only displaying parameters that differ from the pipeline defaults !!
------------------------------------------------------
If you use nf-core/hic for your analysis please cite:

* The pipeline
  https://doi.org/10.5281/zenodo.2669513

* The nf-core framework
  https://doi.org/10.1038/s41587-020-0439-x

* Software dependencies
  https://github.com/nf-core/hic/blob/master/CITATIONS.md
------------------------------------------------------

WARN: Found unexpected parameters:
* --clusterOptions: null
- Ignore this warning: params.schema_ignore_params = "clusterOptions" 

[-        ] process > NFCORE_HIC:HIC:INPUT_CHECK:... -

[-        ] process > NFCORE_HIC:HIC:INPUT_CHECK:... -
[-        ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[-        ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[-        ] process > NFCORE_HIC:HIC:FASTQC          -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -

[-        ] process > NFCORE_HIC:HIC:INPUT_CHECK:... -
[-        ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[-        ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[-        ] process > NFCORE_HIC:HIC:FASTQC          -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -

[-        ] process > NFCORE_HIC:HIC:INPUT_CHECK:... -
[-        ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[-        ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[-        ] process > NFCORE_HIC:HIC:FASTQC          -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[-        ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[-        ] process > NFCORE_HIC:HIC:COMPARTMENTS... -

[-        ] process > NFCORE_HIC:HIC:INPUT_CHECK:... -
[-        ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[-        ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[-        ] process > NFCORE_HIC:HIC:FASTQC          -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[-        ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[-        ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[-        ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[-        ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[-        ] process > NFCORE_HIC:HIC:MULTIQC         -

[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[-        ] process > NFCORE_HIC:HIC:FASTQC          -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[-        ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[-        ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[-        ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[-        ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[-        ] process > NFCORE_HIC:HIC:MULTIQC         -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]

[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[-        ] process > NFCORE_HIC:HIC:FASTQC          [  0%] 0 of 1
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... [  0%] 0 of 2
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[-        ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[-        ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[-        ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[-        ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[-        ] process > NFCORE_HIC:HIC:MULTIQC         -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]

[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[-        ] process > NFCORE_HIC:HIC:FASTQC          [  0%] 0 of 1
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... [  0%] 0 of 2
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[6a/3e758f] process > NFCORE_HIC:HIC:COOLER:COOLE... [100%] 3 of 3, cached: 3 ✔
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[-        ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[-        ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[-        ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[-        ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[-        ] process > NFCORE_HIC:HIC:MULTIQC         -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]

executor >  slurm (1)
[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[-        ] process > NFCORE_HIC:HIC:FASTQC          [  0%] 0 of 1
[e7/0a8c55] process > NFCORE_HIC:HIC:HICPRO:HICPR... [  0%] 0 of 2
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[6a/3e758f] process > NFCORE_HIC:HIC:COOLER:COOLE... [100%] 3 of 3, cached: 3 ✔
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[-        ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[-        ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[-        ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[-        ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[-        ] process > NFCORE_HIC:HIC:MULTIQC         -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]

executor >  slurm (2)
[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f4/e422b9] process > NFCORE_HIC:HIC:FASTQC (TDMSO)  [  0%] 0 of 1
[e7/0a8c55] process > NFCORE_HIC:HIC:HICPRO:HICPR... [  0%] 0 of 2
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[6a/3e758f] process > NFCORE_HIC:HIC:COOLER:COOLE... [100%] 3 of 3, cached: 3 ✔
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[-        ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[-        ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[-        ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[-        ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[-        ] process > NFCORE_HIC:HIC:MULTIQC         -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]

executor >  slurm (3)
[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f4/e422b9] process > NFCORE_HIC:HIC:FASTQC (TDMSO)  [  0%] 0 of 1
[b6/d18468] process > NFCORE_HIC:HIC:HICPRO:HICPR... [  0%] 0 of 2
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[6a/3e758f] process > NFCORE_HIC:HIC:COOLER:COOLE... [100%] 3 of 3, cached: 3 ✔
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[-        ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[-        ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[-        ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[-        ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[-        ] process > NFCORE_HIC:HIC:MULTIQC         -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]

executor >  slurm (3)
[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f4/e422b9] process > NFCORE_HIC:HIC:FASTQC (TDMSO)  [  0%] 0 of 1
[b6/d18468] process > NFCORE_HIC:HIC:HICPRO:HICPR... [  0%] 0 of 2
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[-        ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[6a/3e758f] process > NFCORE_HIC:HIC:COOLER:COOLE... [100%] 3 of 3, cached: 3 ✔
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[-        ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[-        ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[-        ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[-        ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[-        ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[-        ] process > NFCORE_HIC:HIC:MULTIQC         -


### Relevant files

_No response_

### System information

_No response_
@Krithika-Bhuvan Krithika-Bhuvan added the bug Something isn't working label Apr 30, 2024
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