Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Change bwt2_index input to take input tar/tar.gz file rather than path + base name #157

Open
IttaiEres opened this issue Apr 4, 2023 · 0 comments
Labels
enhancement New feature or request

Comments

@IttaiEres
Copy link

Description of feature

Could the bwt2_index input parameter be structured such that an input tar/tar.gz file can also be taken, rather than a path with a base name? I believe nf-core Cut & Run's prepare_genome.nf implementation does this already. I ask because in some compute environments, the lack of an existing file that has the base name of the indices can cause an issue.

Thank you!

@IttaiEres IttaiEres added the enhancement New feature or request label Apr 4, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant