Skip to content

Issues: nf-core/chipseq

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

36 Open 139 Closed
36 Open 139 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Macs2 Output bug Something isn't working
#388 opened May 8, 2024 by kittyBS
Remove lib folder to get ready for v2.13.1 template merge enhancement WIP Work in progress
#387 opened Apr 9, 2024 by JoseEspinosa
@JoseEspinosa
IDR analysis enhancement
#386 opened Apr 4, 2024 by ZeinBader
Improve website on parameters section Alignment Options for argument --save_unaligned enhancement
#385 opened Mar 20, 2024 by aghr
Can't run if there is no control enhancement
#384 opened Mar 1, 2024 by d-jch
Update MACS to v3 enhancement
#378 opened Jan 25, 2024 by alexpmagalhaes
Error running the pipline test in the BWA index step bug Something isn't working
#376 opened Jan 19, 2024 by Alhajuji
Error with NextSeq trimming bug Something isn't working
#375 opened Dec 22, 2023 by gitMakeCoffee
MACS2: Too few paired peaks (0) so I can not build the model! bug Something isn't working
#374 opened Dec 20, 2023 by dannyjwan
minor "samplesheet_pe.csv" format issue bug Something isn't working
#369 opened Oct 19, 2023 by hukai916
Get rid of checkIfExists for params paths enhancement
#367 opened Oct 16, 2023 by JoseEspinosa
@JoseEspinosa
Default values for p-value and FDR enhancement
#364 opened Sep 12, 2023 by amibe1
package or namespace load failed for ‘UpSetR’ bug Something isn't working
#360 opened Jul 25, 2023 by Nicobouch
3
Normalisation of bigwig files enhancement
#357 opened Jul 18, 2023 by alhh507
Header missing is in bowtie2 outputted bam files enhancement
#347 opened May 20, 2023 by chiefcat 2.1
Provide replicate information explicitly in samplesheet enhancement WIP Work in progress
#343 opened Apr 26, 2023 by JoseEspinosa 2.1
@JoseEspinosa
5
Add --only_step options enhancement
#337 opened Mar 8, 2023 by IStevant
MACS2 steps did not carried out bug Something isn't working
#336 opened Mar 5, 2023 by wook2014
2
nextflow.script.ScriptBinding.check_max() bug Something isn't working
#335 opened Feb 9, 2023 by fgualdr
1
Error exit status (1) in NFCORE_CHIPSEQ:CHIPSEQ:CUSTOM_DUMPSOFTWAREVERSIONS bug Something isn't working
#333 opened Feb 5, 2023 by nayem-haque
2
Both '--read_length' and '--macs_gsize' not specified! Please specify either to infer MACS2 genome size for peak calling. docs Documentation enhancement
#328 opened Jan 10, 2023 by ariadnaaterrades
1
Spike ins normalization enhancement
#321 opened Oct 28, 2022 by EmanuelSoda
11
Samplesheet description in the documentation bug Something isn't working docs Documentation
#320 opened Oct 24, 2022 by IStevant 2.1
2
chipseq - samplesheet doesn't have minimum number of columns question Further information is requested
#319 opened Oct 21, 2022 by BalajiVenkadakrishnan
1
nf-core download skips 'bowtie2 align' singularity image with container string parsing error bug Something isn't working
#318 opened Oct 18, 2022 by rdwngs
3
ProTip! Follow long discussions with comments:>50.