TemAnalysis

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title: TemAnalysis permalink: /TemAnalysis/

Tools for working on digital micrographs

Sorry, for the moment not much documentation. I started to write something (see the doc directory in the tarball).

Download

Download source code from the vips website: http://www.vips.ecs.soton.ac.uk/vips-7.10/tem

Installing

To use it, download the tarball below. For compilation and installation the following recipe will hopefully work:

 tar vxzf im_tem.tar.gz
 cd im_tem-0.x
 ./configure
 make
 make install

This will install im_tem.plg, and libraries to /usr/local/lib and copies TEM.def as well as complex_class.def to /usr/local/share/nip2/start.

Or do

 ./configure -prefix=/my/own/location
 make
 make install

This will install im_tem.plg, libraries etc. to /my/own/location/....

The definition files, TEM.def and complex_class.def, included in the tarball defines a set of tools using im_tem.plg within nip2.

Using

There is a sample down in the attachment section of this page.

Load it and set:

• header size = 8
• xsize = 1024
• ysize = 1024
• bpp = 2
• nswap = Yes

Changes

2005-05-25

• replaced plplot by use of gnuplot, since it seems to be better available in distributions 2005-05-23 im_tem-0.3
• added function for finding centre of an image with twofold symmetry
• added function for ploting linescan through images
• added a complex class with the help of J. C.
• started adding documentation using doxygen. 2005-05-13 im_tem-0.2
• changes in configure.in and Makefile.am's to automagically check for libglib and and libvips ./configure and make should build the plugin now
• make install should install to /usr/local/lib or $PREFIX (Thanks to John for some help)