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39 Open 53 Closed
39 Open 53 Closed
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Issues list

--help
#98 opened May 6, 2024 by cmkobel
1
Returns exit code 0 on error.
#97 opened May 6, 2024 by cmkobel
1
Benchmarking
#96 opened Apr 25, 2024 by cmkobel
4 tasks
📄 Publish scientific communication
Remove mamba as dependency from bioconda recipe? low priority
#94 opened Mar 19, 2024 by cmkobel
Option to add .faa files for analysis downstream of gene calling low priority
#91 opened Feb 8, 2024 by cmkobel
wget should not use --continue, but somehow otherwise never write to an alternatively named file.
#87 opened Feb 2, 2024 by cmkobel
gtdbtk: mash: error while loading shared libraries: libgsl.so.25: cannot open shared object file: No such file or directory
#86 opened Feb 2, 2024 by cmkobel
N<4, iqtree: ERROR: It makes no sense to perform bootstrap with less than 4 sequences.
#85 opened Feb 2, 2024 by cmkobel
1
Write communications paper high priority
#84 opened Feb 1, 2024 by cmkobel
3 of 14 tasks
📄 Publish scientific communication
Remove busco?
#83 opened Jan 27, 2024 by cmkobel
Prune test datasets
#82 opened Jan 26, 2024 by cmkobel
mamba requirement is unnecessarily specific
#81 opened Jan 26, 2024 by cmkobel
1
Reach out to possible co-authors
#80 opened Jan 24, 2024 by cmkobel
1 task
1
Use newer uniref 100 database for kegg calling
#78 opened Jan 22, 2024 by cmkobel 📄 Publish scientific communication
3
Messy directories enhancement New feature or request
#76 opened Jan 16, 2024 by cmkobel
1
Syntenic core genome enhancement New feature or request
#71 opened Nov 14, 2023 by cmkobel
Midpoint rooting in the report tree? enhancement New feature or request
#70 opened Nov 8, 2023 by cmkobel
Interactive plots in the report document enhancement New feature or request
#69 opened Nov 8, 2023 by cmkobel
Alternative genome annotation enhancement New feature or request high priority
#68 opened Nov 7, 2023 by cmkobel
3 tasks
📄 Publish scientific communication
1
Download databases without a dummy file being present enhancement New feature or request
#67 opened Nov 3, 2023 by cmkobel
3
Bioconda recipe simplification enhancement New feature or request
#66 opened Nov 1, 2023 by cmkobel
Feature request enhancement New feature or request
#62 opened Oct 11, 2023 by magnusarntzen
3
Beer bug bounty 🍻🪲🐛
#61 opened Oct 11, 2023 by cmkobel
User should be actively warned when not using apptainer. enhancement New feature or request
#59 opened Oct 11, 2023 by cmkobel
Rename assemblycomparator2? suggestion Ideas that doesn't necessarily need attention.
#57 opened Oct 10, 2023 by cmkobel
2
ProTip! What’s not been updated in a month: updated:<2024-04-12.