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Alternative genome annotation #68

Closed
3 tasks done
cmkobel opened this issue Nov 7, 2023 · 2 comments
Closed
3 tasks done

Alternative genome annotation #68

cmkobel opened this issue Nov 7, 2023 · 2 comments
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enhancement New feature or request high priority
Milestone
📄 Publish scienti...

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@cmkobel
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cmkobel commented Nov 7, 2023 •
edited

  • Eggnogg
  • Bakta

Also

  • The user should be able to specify dynamically which annotator to use and the downstream tools should use these results instead.
@cmkobel cmkobel added the enhancement New feature or request label Nov 7, 2023
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cmkobel commented Mar 23, 2024

I think snakemake supports having different rules producing the same output files, and then having like priorities or something?

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cmkobel commented May 14, 2024

Looks like the output from eggnog is insufficient for it to be considered a standalone annotater. Also bakta is missing the .gbk file so antismash gets that from prokka.

@cmkobel cmkobel closed this as completed May 14, 2024
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enhancement New feature or request high priority
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