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gtdbtk: mash: error while loading shared libraries: libgsl.so.25: cannot open shared object file: No such file or directory #86

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cmkobel opened this issue Feb 2, 2024 · 1 comment

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@cmkobel
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cmkobel commented Feb 2, 2024

Just listing for future debugging.

[2024-02-02 16:29:54] INFO: GTDB-Tk v2.3.2                                                                                               
[2024-02-02 16:29:54] INFO: gtdbtk classify_wf --mash_db /spaceface/shared_databases/asscom2_v2.5.5+/gtdb_sketch/mash_db.msh --batchfile 
results_ac2/gtdbtk/batchfile.tsv --out_dir results_ac2/gtdbtk/ --cpus 8 --keep_intermediates --force                                     
[2024-02-02 16:29:54] INFO: Using GTDB-Tk reference data version r214: /spaceface/shared_databases/asscom2_v2.5.5+/gtdb/release214/      
[2024-02-02 16:29:54] INFO: Loading reference genomes.                                                                                   
[2024-02-02 16:29:54] INFO: Using Mash version unknown
[2024-02-02 16:29:54] INFO: Creating Mash sketch file: results_ac2/gtdbtk/classify/ani_screen/intermediate_results/mash/gtdbtk.user_query
_sketch.msh                                                                                                                              
[2024-02-02 16:29:54] ERROR: Error generating Mash sketch:                                                                               
mash: error while loading shared libraries: libgsl.so.25: cannot open shared object file: No such file or directory                      
                                                                                                                                         
[2024-02-02 16:29:54] ERROR: Controlled exit resulting from an unrecoverable error or warning.       
@cmkobel
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cmkobel commented May 14, 2024

Haven't seen this for a while. Assuming it is fixed..

@cmkobel cmkobel closed this as completed May 14, 2024
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