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19 Open 68 Closed
19 Open 68 Closed
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Issues list

Add clinvar-ingest per clinvar release Q/A measures to workflow
#134 opened Apr 4, 2024 by toneillbroad
@toneillbroad
Enable gzip compression on file writing
#129 opened Mar 21, 2024 by theferrit32
@theferrit32
Enable more Ruff rules
#123 opened Mar 7, 2024 by theferrit32
@theferrit32
Rework jsonify_content out of model classes up to the function doing the serialization to files
#120 opened Feb 29, 2024 by theferrit32
@theferrit32
1
Create xml_archive metadata table
#119 opened Feb 28, 2024 by theferrit32
Parse rcv_accession
#118 opened Feb 28, 2024 by theferrit32
@theferrit32
1
Parse clinical_assertion_variation
#117 opened Feb 28, 2024 by theferrit32
Model remaining baseline classes Epic
#112 opened Feb 27, 2024 by theferrit32
@theferrit32
Move storage bucket to same region as the workflow and cloud run service
#75 opened Dec 18, 2023 by theferrit32
@theferrit32
1
Evaluate binary row/column formats Parquet and Avro
#74 opened Dec 18, 2023 by theferrit32
Make /parse step not re-run if input file is the same and whole step was successfully run enhancement New feature or request
#64 opened Dec 14, 2023 by theferrit32
Make /copy step not re-copy if destination file already exists in full enhancement New feature or request
#63 opened Dec 14, 2023 by theferrit32
Model subclasses decorated with @dataclass cannot inherit concrete methods on Model that are set by dataclass
#51 opened Dec 4, 2023 by theferrit32
Validate against existing release tables
#46 opened Nov 29, 2023 by theferrit32
@theferrit32
Manually add variants to VCEP Tracker report
#40 opened Nov 27, 2023 by dazzariti
@dazzariti
Drop nested child variants from Genotype and Haplotype
#36 opened Nov 25, 2023 by theferrit32
Create GermlineClassification MVP output file(s) for use in tests 2.0-alpha
#5 opened Oct 18, 2023 by theferrit32
@larrybabb
Define new classification baseline schema
#4 opened Oct 18, 2023 by theferrit32
@larrybabb
1
Write unit test for simple output created from parsed input, compared to expected output file
#2 opened Oct 18, 2023 by theferrit32
@theferrit32
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