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Add clinvar-ingest per clinvar release Q/A measures to workflow #134

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toneillbroad opened this issue Apr 4, 2024 · 0 comments
Open

Add clinvar-ingest per clinvar release Q/A measures to workflow #134

toneillbroad opened this issue Apr 4, 2024 · 0 comments
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Add Q/A measures to per ClinVar release ingest. Measures include:

  • count of VCVs, SCVs, RCVs, Genes, Submitters, Submissions, etc. pcregrep'd from XML file
  • compare those to counts from BQ tables

If counts are off, send a slack messga eindicating the issue.
Create the DO_NOT_PROCESS sentinel file in GCP to stop processing of future clinvar releases until the issue is resolved.
@toneillbroad toneillbroad self-assigned this Apr 4, 2024
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