Skip to content

Issues: EBI-Metagenomics/emg-viral-pipeline

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

18 Open 49 Closed
18 Open 49 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Not able to run "nextflow pull EBI-Metagenomics/emg-viral-pipeline"
#121 opened Mar 30, 2024 by arpit20328
1
Missing process or function with name 'getFileSystem'
#120 opened Mar 23, 2024 by arpit20328
@mberacochea
3
COBRA improves the completeness and contiguity of viral genomes assembled from metagenomes documentation Improvements or additions to documentation
#119 opened Feb 7, 2024 by hoelzer
[Feature Request] Conda Distribution for Taxonomic Identification
#117 opened Nov 12, 2023 by erfanshekarriz
1
Taxonomic ranks are inverted
#113 opened Sep 7, 2023 by Ales-ibt
9
Imitervirales assignment although not well supported by ViPhOGs
#110 opened Jul 14, 2023 by hoelzer
Fix sankey plot visualization for undefined ranks
#109 opened Jul 14, 2023 by hoelzer
preprocess:rename idle state
#108 opened Jul 7, 2023 by Sanrrone
@mberacochea
12
Can Prodigal-GV make 'real world' difference compared to original Prodigal?
#102 opened Jun 23, 2023 by GomathiNayagam
2
Fail to publish CheckV results Warning
#90 opened Jan 18, 2023 by hoelzer
Upgrade checkV to version 1.0.1 enhancement New feature or request good first issue Good for newcomers
#86 opened Jan 5, 2023 by mberacochea
Use GH actions / EBI gitlab to build and push the containers if there are changes. enhancement New feature or request
#85 opened Jan 5, 2023 by mberacochea
1
Test Virsorter2 as a replacement for Virsorter
#84 opened Jan 2, 2023 by hoelzer
Simple test command
#66 opened Feb 28, 2022 by hoelzer
Allow user adjustment of minimal informative protein threshold enhancement New feature or request
#65 opened Jan 5, 2022 by hoelzer
Add scroll bar for ChromoMap plot enhancement New feature or request
#39 opened Nov 11, 2020 by hoelzer
@hoelzer
1
PPR-Meta scoring documentation Improvements or additions to documentation enhancement New feature or request
#35 opened Oct 27, 2020 by hoelzer
2
Performance
#2 opened Feb 17, 2020 by mberacochea
@mberacochea
1
ProTip! Mix and match filters to narrow down what you’re looking for.