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Simple test command #66

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hoelzer opened this issue Feb 28, 2022 · 0 comments
Open

Simple test command #66

hoelzer opened this issue Feb 28, 2022 · 0 comments

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@hoelzer
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hoelzer commented Feb 28, 2022 •
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The README already provides a simple test command. However, this could be also implemented in the Nextflow version via a test profile. Then, the user can just run

nextflow pull EBI-Metagenomics/emg-viral-pipeline
nextflow run EBI-Metagenomics/emg-viral-pipeline -r v0.4.0 -profile slurm,singularity,test

Here are some examples of such test profile implementations:

https://github.com/hoelzer-lab/rnaflow/
https://github.com/replikation/poreCov
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