Not able to run "nextflow pull EBI-Metagenomics/emg-viral-pipeline"

[arpit20328]

When I run "nextflow pull EBI-Metagenomics/emg-viral-pipeline"

I get error :

Checking EBI-Metagenomics/emg-viral-pipeline ...
Project config file is malformed -- Cause: Compile failed for sources FixedSetSources[name='/groovy/script/Script43C7013E1B85D3533DD5611705899A16/_nf_config_be99724f']. Cause: org.codehaus.groovy.control.MultipleCompilationErrorsException: startup failed:
/groovy/script/Script43C7013E1B85D3533DD5611705899A16/_nf_config_be99724f: 54: The LHS of an assignment should be a variable or a field accessing expression @ line 54, column 20.
output = /home/arpit/Karishma_data_set_Wochenendr_master_15th_march_result/
^

1 error

Any solution ?

[hoelzer]

Hey!

Are you using the latest nextflow -version? How did you install nextflow? Can you pull other pipelines? Let's say nextflow pull hoelzer/pocp?

[hoelzer]

I am closing this bc this seems to be a nextflow installation/configuration error not related to VIRify. Please reopen @arpit20328 if you need further assistance!