Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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Updated
May 24, 2024 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
An R package for performing STAAR procedure in whole-genome sequencing studies
Multi-class classification of drug resistance in MTB clinical isolates
The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
VIral GEnome ASsembly pipelines for WGS
vSNP -- validate SNPs
vcfdist: Accurately benchmarking phased variant calls
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
Clinical Whole Genome and Exome Sequencing Pipeline
Smart and Accurate Polishing of Phase Haplotypes Integrating Read Enhancements (SAPPHIRE)
An in silico tool to predict Shigella serotypes
esohinformatics
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses. Flexible to datasets that combine high/low coverage and historical/fresh samples.
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
An interacitve python interface for inspection of somatic mutations
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
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