#

trimgalore

Here are 5 public repositories matching this topic...

fmalmeida / ngs-preprocess

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

workflow bioinformatics pipeline nextflow reproducible-research ngs reproducible-science pacbio illumina nanopack trimgalore ngs-preprocess bax2bam porechop pacbio-ccs

Updated May 13, 2024
Nextflow

digo4 / Clinical-Genomics

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

picard samtools bwa-mem varscan bcftools bowtie2 trimgalore cutadapt fastqc freebayes fastp gatk4 trimmomatic gatk-bestpractices gatk-joint-variant-calling-workflow gatk-cnv gatk4-haplotypecaller

Updated Jan 17, 2024
Shell

PulmonomicsLab / mcdr-mtb-standalone-v2

Multi-class classification of drug resistance in MTB clinical isolates

machine-learning r vcf shell-script caret variant-calling samtools bwa-mem whole-genome-sequencing multiclass-classification trimgalore multilayer-perceptron freebayes explainable-ai shap mycobacterium-tuberculosis dalex drug-resistance-prediction

Updated May 21, 2024
Shell

hisplan / trimgalore

trimgalore modified version for prism

Updated Mar 15, 2017
Perl

PulmonomicsLab / mcdr-mtb-standalone

Multi-class classification of drug resistance in MTB clinical isolates

machine-learning svm prediction vcf diagnostics shell-script caret variant-calling samtools bwa-mem r-programming whole-genome-sequencing trimgalore multi-class-classification freebayes mycobacterium-tuberculosis drug-resistance-prediction

Updated Jan 30, 2024
Shell

Improve this page

Add a description, image, and links to the trimgalore topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the trimgalore topic, visit your repo's landing page and select "manage topics."