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Pull requests: nf-core/sarek

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Pull requests list

Update CNVkit
update Tool update
#1502 opened May 6, 2024 by lescai Loading…
10 tasks
3.5
18
WIP: Add sentieon tnseq
#1497 opened May 3, 2024 by SPPearce • Draft 3.5
1
Added Minimap2 alignment
#1486 opened Apr 25, 2024 by EgorGuga Loading…
8 of 10 tasks
3.5
2
Add module bcftools/norm to sarek (in progress)
#1483 opened Apr 25, 2024 by JC-Delmas Loading…
1 of 11 tasks
3.5
9
Error hangling for the combination of sentieon-dedup and non-sentieon aligner
#1481 opened Apr 24, 2024 by asp8200 • Draft
11 tasks
3.5
2
feat(nf-boost): add boost.cleanup = true
#1479 opened Apr 23, 2024 by maxulysse Loading…
11 tasks
5
feat(nf-schema): remove nf-validation and update to nf-schema
#1478 opened Apr 22, 2024 by maxulysse Loading…
11 tasks
3.5
3
[WIP] Benchmarking per pipeline / POC
#1448 opened Mar 22, 2024 by famosab • Draft
10 tasks
@famosab
1
Parabricks alignment
help wanted Extra attention is needed
#1444 opened Mar 20, 2024 by Furentsu • Draft
10 tasks
3.5
@Furentsu
6
Sambamba
#1368 opened Dec 29, 2023 by stavgrossfeld • Draft
10 tasks
2
Replace DRAGMAP with NARFMAP
#1358 opened Dec 18, 2023 by edmundmiller • Draft
@edmundmiller
5
switch to using --write-index instead of samtools index
#1338 opened Nov 23, 2023 by FriederikeHanssen • Draft
4 tasks
3
implementation of goleft/indexcov
#1312 opened Nov 3, 2023 by lindenb Loading…
1 of 9 tasks
9
[WIP] --tools is now case insensitive
#1188 opened Aug 18, 2023 by adamrtalbot Loading…
10 tasks
1
28
Varlociraptor calls
#1154 opened Jul 12, 2023 by FriederikeHanssen • Draft
10 tasks
3
WIP: transfer mutect2 SBWFs to modules repo
#1147 opened Jul 8, 2023 by maxulysse • Draft
2
Allow existing GenomicsDb as input to incrementally update
#1116 opened Jun 18, 2023 by FriederikeHanssen • Draft
10 tasks
12
Enable multiple ploidy values for controlfreec
#980 opened Mar 28, 2023 by FriederikeHanssen • Draft
9 tasks
1
11
TMB
#616 opened Jul 4, 2022 by FriederikeHanssen • Draft 3.5
8
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