Strelka2 germline and somatic small variant caller
-
Updated
Dec 29, 2021 - C++
Strelka2 germline and somatic small variant caller
Personal Cancer Genome Reporter (PCGR)
Microassembly based somatic variant caller for NGS data
SNV calling from single cell sequencing
Generic human DNA variant annotation pipeline
A method for variant graph genotyping based on exact alignment of k-mers
ClairS - a deep-learning method for long-read somatic small variant calling
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
A snakemake pipeline that performs variant calling of Nanopore reads from FastQ files for non-model organisms
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
Filters for Next Generation Sequencing
A somatic mutation signature simulator
Add a description, image, and links to the snvs topic page so that developers can more easily learn about it.
To associate your repository with the snvs topic, visit your repo's landing page and select "manage topics."