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Issues list

openCRAVAT application
#63 opened May 24, 2024 by ariannadib
1
bam.lst file format
#62 opened May 23, 2024 by aidanshoham12
1
Error during LDrefinement
#61 opened May 21, 2024 by Thapeachydude
3
Different somatic calls across Monopogen v.1.0 and v1.6.0 help wanted Extra attention is needed
#58 opened May 9, 2024 by ypershad
2
Missing chr20.germline.vcf from germline calling step
#55 opened May 7, 2024 by briansha
8
Error in Germline SNV calling
#54 opened May 7, 2024 by Teerapon789
5
outputs of cellScan
#53 opened May 6, 2024 by ariannadib
3
region "-o" specifies an unknown reference name
#51 opened May 3, 2024 by ariannadib
1
chr20.gp.vcf.gz: No such file or directory
#50 opened Apr 7, 2024 by dipingxian431
5
Germline job never finish
#47 opened Mar 27, 2024 by MetteBoge
12
Explanation .gl, .gp, .phased files
#40 opened Feb 13, 2024 by rafaella-buzatu
1
about cell counts in somatic SNV output(chr*.putativeSNVs.csv)
#35 opened Jan 21, 2024 by hanjun98
2
Missing genotypes？
#34 opened Jan 19, 2024 by wangjunyu-cumt
7
Requires unsupported openssl version
#32 opened Jan 11, 2024 by ArunaNannapaneni
Error in Germline
#31 opened Jan 9, 2024 by parth2608
3
Issues in the test file chr20.maester_scRNA.bam for somatic mutation calling
#30 opened Dec 12, 2023 by alextidd
6
Error on gemline calling
#26 opened Oct 26, 2023 by carolwxm
1
preprocess error
#24 opened Oct 17, 2023 by zheng-sc
2
nothing in the germline.vcf file
#21 opened Oct 5, 2023 by hanliu0119
2
About ld refinement on putative somatic SNVs, spend a lot of time
#18 opened Sep 20, 2023 by monoplasty
3
About run data preprocess
#17 opened Sep 19, 2023 by WeiZhaoLuck
7
About phased.vcf.gz generation during germline calling
#15 opened Sep 11, 2023 by scg-dgist
5
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
#14 opened Sep 8, 2023 by moOsmanMD
6
Error about data preprocess
#13 opened Sep 6, 2023 by TuoCai2000
6
About Somatic SNV calling from scRNA-seq
#12 opened Sep 6, 2023 by scg-dgist
2
ProTip! Exclude everything labeled bug with -label:bug.