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pav pav Public

Phased assembly variant caller

Python 80 8
smrtsv2 smrtsv2 Public

Structural variant caller

Python 53 6
pacbio_variant_caller pacbio_variant_caller Public archive

SMRT-SV: Structural variant and indel caller for PacBio reads

Python 28 15
svpop svpop Public

Variant annotation and merging pipeline

Python 24 6
vcf-flow vcf-flow Public

Forked from huddlej/tab-to-vcf

Convert tab-delimited file into a VCF

Python 8 2
chm1_scripts chm1_scripts Public

Python 8 5

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Showing 10 of 75 repositories

CDR-Finder Public Forked from arozanski97/CDR-Finder
CDR-Finder

Python 0 1 0 0 Updated May 24, 2024
docker_hub Public
Repository for Testing Automatic Builds with Docker Hub

Dockerfile 1 1 0 0 Updated May 23, 2024
reassign-sex-chr Public
Pipeline for reassigning duplicated or fragmented sex chromosomes to isolated haplotypes

Python 0 0 0 0 Updated May 9, 2024
back-reference-qc Public Forked from projectoriented/back-reference-qc
Detect outlier long-reads by using its Illumina counterpart.

Python 0 2 0 0 Updated May 6, 2024
assembly_eval Public

Python 0 1 0 0 Updated Apr 29, 2024
hifiasm-smk Public
Snakemake software repo for hifiasm

Python 1 MIT 0 0 0 Updated Apr 26, 2024
denovo_sv_validation Public Forked from wharvey31/denovo_sv_validation
Pipeline for validation of de novo SVs

Python 1 MIT 3 0 0 Updated Apr 23, 2024
svpop Public
Variant annotation and merging pipeline

Python 24 6 5 0 Updated Apr 23, 2024
compteam_tools Public
A collection of custom scripts for everyday long read analysis

Python 0 1 0 0 Updated Apr 19, 2024
assembly_qc Public Forked from youngjun0827/assembly_qc
assembly QC pipeline starts with foreign contamination screening

Python 0 1 0 0 Updated Apr 12, 2024

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