Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

Python wraper for MetaMap

MNE-CPP: A Framework for Electrophysiology

Ontology for consent codes and data use requirements

Few- and Zero-shot Multi-Label Learning for Structured Label Spaces

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Computational Analysis of Novel Drug Opportunities

An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL…

Package for biomedical data model and metadata ingress management

Alaska Project Ideas, mentored by the researchers and collaborators of University of Alaska and supported by open-source entities and enthusiasts in Alaska.

Few- and Zero-shot Multi-Label Learning for Structured Label Spaces

MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)

BioMedICUS: A biomedical and clinical NLP engine.

Website for the JuliaHealth organization (powered by Franklin.jl).

R package for delineating temporal dataset shifts in Eletronic Health Records

CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) within chromosomes.

Build project for all CEDAR Java repositories

ETUDE (Evaluation Tool for Unstructured Data and Extractions) is a Python-based tool that provides consistent evaluation options across a range of annotation schemata and corpus formats

📎 About MIDA Project

A software toolkit for the interconversion of standard data models for phenotypic data