Signal-level algorithms for MinION data
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Updated
Aug 5, 2023 - C++
Signal-level algorithms for MinION data
Ultra-fast and memory-efficient (meta-)genome assembler
SPAdes Genome Assembler
Viral genomics analysis pipelines
Master Algorithmic Programming Techniques. Learn algorithms through programming and advance your software engineering or data science career
Fast and accurate de novo assembler for long reads
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
Tools for fast and flexible genome assembly scaffolding and improvement
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
Simple bacterial assembly and annotation pipeline
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
The personal web site of Shaun Jackman
Detailed bioinformatics scripts and methods used in the NAM genome paper.
De novo genome assembly and multisample variant calling
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
⛓ Correct misassemblies using linked AND long reads
MetaCarvel: A scaffolder for metagenomes
Long-reads Gap-free Chromosome-scale Assembler
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