Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
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Updated
Jul 7, 2023 - Python
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Learning the Variant Call Format
BioC++ Input/Output library
Checks vcf files and removes loci and samples with too many missings, can also input genotypes in missing (various options for this).
Convert an standard VCF to JSON format
Modify KASP assay calls to a VCF format
A command-line parser for VCF files designed for population genetics analyses.
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