Pinned

1. pyfaidx pyfaidx Public

   Efficient pythonic random access to fasta subsequences

   Python 440 73

2. Novartis/pisces Novartis/pisces Public

   PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

   Python 28 3

3. fastqp fastqp Public

   Simple FASTQ quality assessment using Python

   Python 107 14

4. simplesam simplesam Public

   Simple pure Python SAM parser and objects for working with SAM records

   Python 61 8

5. strandex strandex Public

   Sample an approximate number of reads from a fastq file without reading the entire file

   Python 11 1

6. hamstring hamstring Public

   Tools for generating and decoding error-correcting DNA barcodes

   Python 16 4