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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

Pinned

  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 61 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 24 7

  3. CoreGx CoreGx Public

    Shared code for both PharmacoGx and RadioGx

    R 2 3

  4. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 1 1

Repositories

Showing 10 of 166 repositories
  • ORCESTRA Public

    ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).

    JavaScript 4 Apache-2.0 1 15 7 Updated May 2, 2024
  • XevaDB Public

    XevaDB is a database for PDX pharmacogenomic data.

    JavaScript 0 0 11 0 Updated May 1, 2024
  • ORCESTRA-api Public
    Python 1 0 10 1 Updated Apr 29, 2024
  • XevaDI Public

    The XevaDI is a python package that transforms the CSV files from the Xeva set to create the database table for XevaDB.

    Python 0 0 0 0 Updated Apr 21, 2024
  • BrachyNewLoss Public
    Python 0 MIT 0 0 0 Updated Apr 19, 2024
  • AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 1 MIT 1 4 0 Updated Apr 18, 2024
  • readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Python 1 MIT 0 2 0 Updated Apr 17, 2024
  • PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 61 GPL-3.0 26 70 0 Updated Apr 16, 2024
  • CervixRadiomics Public
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 8, 2024
  • PredictioR Public
    HTML 0 MIT 0 0 0 Updated Apr 3, 2024
View all repositories

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