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53 Open 119 Closed
53 Open 119 Closed
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Issues list

Ambient RNA removal and doublet detection for Smart-seq2 dataset question Further information is requested
#273 opened Apr 26, 2024 by ngvananh2508
Issue on page /introduction/raw_data_processing.html
#272 opened Apr 19, 2024 by chenqiuhao
@Zethson
1
Wrong plot titles in scCODA part bug Something isn't working
#271 opened Apr 19, 2024 by Zethson
@Zethson
Packages compatibility issue when creating an env using preprocessing.yml bug Something isn't working
#270 opened Apr 19, 2024 by inaciomdrs
@AnnaChristina
reach OverflowError in 8. Feature selection
#269 opened Apr 17, 2024 by Zethson
@AnnaChristina
Switch size factor analysis to pyDESeq2
#267 opened Apr 16, 2024 by abearab
@Zethson
2
Create PR preview enhancement New feature or request
#265 opened Apr 6, 2024 by Zethson
Pseudo-replicates in DE analysis
#261 opened Feb 22, 2024 by emdann
1
Question about the clustering question Further information is requested
#260 opened Feb 15, 2024 by Gokhan169
@AnnaChristina
Mistake in AIRR epitope database annotation bug Something isn't working
#258 opened Jan 12, 2024 by grst
Normalized Count Scaling Before PCA? question Further information is requested
#257 opened Jan 10, 2024 by AlinaKurjan
Filter warnings for better readability on /cellular_structure/integration.html ? style Style
#253 opened Nov 15, 2023 by VladimirShitov
@lazappi @Zethson
2
Remove TODOs from text bug Something isn't working
#249 opened Nov 13, 2023 by VladimirShitov
1
Quality control comments/suggestions enhancement New feature or request
#248 opened Nov 10, 2023 by lazappi
1 of 8 tasks
@AnnaChristina
2
Remove all Binder buttons enhancement New feature or request
#246 opened Nov 3, 2023 by Zethson
@Zethson
5
Include reference in spatial variable gene detection notebook enhancement New feature or request
#245 opened Nov 3, 2023 by AnnaChristina
@AnnaChristina
Wrong visualization of doublets cluster bug Something isn't working
#244 opened Oct 26, 2023 by VladimirShitov
@AnnaChristina
Reference for pearson residual normalization documentation Improvements or additions to documentation
#243 opened Oct 25, 2023 by eroell
2
Issue on page /preprocessing_visualization/quality_control.html
#242 opened Oct 24, 2023 by partrita
Question about observed value and true expression value question Further information is requested
#233 opened Aug 24, 2023 by caodudu
@Zethson
3
Add a notebook for ontology mapping enhancement New feature or request
#222 opened Jul 20, 2023 by Zethson
@Zethson
Batch-aware highly deviant gene selection question Further information is requested
#221 opened Jul 10, 2023 by AlinaKurjan
@AnnaChristina
3
Intergrating strategy between AIR and transcriptomics question Further information is requested
#219 opened Jul 5, 2023 by zhouzhendiao
@drEast
4
DE section issues bug Something isn't working
#212 opened Jun 13, 2023 by le-ander
@alitinet
1
Convert log_eFC to log_2FC in differential gene expression chapter enhancement New feature or request
#211 opened Jun 13, 2023 by ngvananh2508
@alitinet
1
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