Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Wrong visualization of doublets cluster #244

Open
VladimirShitov opened this issue Oct 26, 2023 · 0 comments
Open

Wrong visualization of doublets cluster #244

VladimirShitov opened this issue Oct 26, 2023 · 0 comments
Assignees
Labels
bug Something isn't working

Comments

@VladimirShitov
Copy link
Collaborator

Describe the bug

There is a not critical error in the visualization on this page: https://www.sc-best-practices.org/preprocessing_visualization/quality_control.html

The cluster of doublets is located separately from the singlet clusters. For UMAP/TSNE it would be correct, but in PCA space, it would necessarily be located in between of these clusters.
image

So, to easily make it correct, you can put UMAP on the axes labels. A bit more difficult fix would require changing the location of clusters

@VladimirShitov VladimirShitov added the bug Something isn't working label Oct 26, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

2 participants