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31 Open 82 Closed
31 Open 82 Closed
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Issues list

Simplify naming convention conversion between pydeseq2 and formulaic
#272 opened Apr 19, 2024 by jeandut
[BUG] The vst() function does not work when the algorithm switches to a mean-based dispersion trend. bug Something isn't working
#263 opened Mar 28, 2024 by dguin
1
2
[BUG] Errors saving DeseqDataSet to H5AD bug Something isn't working
#254 opened Mar 14, 2024 by jpintar
dispersion algorithm
#252 opened Mar 14, 2024 by wangjiawen2013
single cell dataset
#248 opened Mar 12, 2024 by wangjiawen2013
1
[BUG] Discrepancies between DESeq2/pyDESeq2 bug Something isn't working
#217 opened Dec 5, 2023 by ledwmp
4
Different results with the same dependencies
#216 opened Dec 1, 2023 by bernheder
4
Support for arbitratry design matrices and contrast vectors enhancement New feature or request
#213 opened Nov 28, 2023 by grst
5
Add a way to create a DeseqDataSet object from normalized count matrix / preprocessed adata object enhancement New feature or request
#205 opened Nov 19, 2023 by VictorCurean
1
Option to specify control genes for fitting size factors enhancement New feature or request
#204 opened Nov 15, 2023 by mbernste
Explanation of ref_level argument of DeseqDataSet() in the tutorials documentation Improvements or additions to documentation
#202 opened Nov 10, 2023 by ozanozisik
[BUG] Overflows in irls_solver and shape mismatch in _refit_without_outliers when using continuous variable bug Something isn't working
#201 opened Nov 8, 2023 by ozanozisik
[BUG] Iterative Mode Hangs bug Something isn't working
#198 opened Oct 30, 2023 by koh-joshua
1
[RFC] Adding rpy2 (and R and deseq2) as test-only dependency.ies to have more flexible end2end tests
#190 opened Oct 19, 2023 by jeandut
[BUG] More flexibility with figures bug Something isn't working
#186 opened Oct 17, 2023 by jbschiratti
[Enhancement] expanded argument not used in utils.build_design_matrix enhancement New feature or request
#184 opened Oct 17, 2023 by khalilouardini
Tutorial including interactions terms in the design
#183 opened Oct 17, 2023 by khalilouardini
Refactor utils.py
#182 opened Oct 17, 2023 by khalilouardini
[FEAT] Add an example with "real data"
#179 opened Oct 17, 2023 by jbschiratti
Adding LRT test
#176 opened Oct 4, 2023 by wxicu
2
1
[BUG] Overflow in .deseq2() and and lfc_shrink() bug Something isn't working
#169 opened Aug 24, 2023 by BeyondTheProof
3
[Feature request] one vs. all others enhancement New feature or request
#168 opened Aug 23, 2023 by acoteataltius
4
[BUG] installation issue with MacOS 11.7.8 bug Something isn't working
#167 opened Aug 20, 2023 by dallna
2
[DOC] Add a tutorial for continuous covariates documentation Improvements or additions to documentation
#165 opened Aug 8, 2023 by BorisMuzellec
[BUG] Raise Erro when the max number of counts table more than int32 bug Something isn't working
#159 opened Jul 25, 2023 by byemaxx
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