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single cell dataset #248

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wangjiawen2013 opened this issue Mar 12, 2024 · 1 comment
Open

single cell dataset #248

wangjiawen2013 opened this issue Mar 12, 2024 · 1 comment

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@wangjiawen2013
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Hi,
Does pydeseq2 support single cell data now? such get the differential expressing genes of each cluster/cell_type?

@BorisMuzellec
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BorisMuzellec commented Mar 12, 2024

Hi @wangjiawen2013! Yes, it's possible to analyse single-cell data with pydeseq2 + decoupleR and/or scanpy.

See this decoupleR vignette or this youtube tutorial.

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