Skip to content

Issues: brentp/peddy

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

27 Open 54 Closed
27 Open 54 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

gVCF input
#91 opened Apr 30, 2024 by zoeward-nz
1
Ancestry composition
#89 opened Dec 3, 2022 by RoniHaas
1
custom sites
#88 opened Sep 22, 2022 by cartographerJ
3
Parallel processing blocked
#86 opened Apr 12, 2022 by MattWellie
1
Runtime for large datasets.
#84 opened Sep 29, 2021 by sdsilva10
4
Report which variants were used?
#81 opened Sep 18, 2020 by bhanratt
1
PCA projection - strange population classification
#78 opened Apr 19, 2020 by numicator
3
Peddy run error: AttributeError: 'DataFrame' object has no attribute 'ix'
#76 opened Mar 20, 2020 by yusmile0618
2
Python version and libraries version incompatibility due to drop support for python 2.7
#70 opened Sep 16, 2019 by NikolaBio
2
Running Ancestry Analysis on Samples with no Hets Found
#69 opened Aug 27, 2019 by angelussong
4
Peddy error - RuntimeWarning
#65 opened Aug 8, 2019 by evagradovich
Library not loaded: @rpath/libdeflate.so
#64 opened Aug 6, 2019 by maksjutov
1
the performance of peddy in a vcf calling from exome sequencing
#62 opened Jul 6, 2019 by N-damo
1
ped file "missing phenotype"
#58 opened Apr 24, 2019 by svergult
1
report 1kg sample names in json output.
#57 opened Mar 19, 2019 by brentp
incorrect expected relatedness for consanguineous family
#56 opened Jan 30, 2019 by ekarlins
6
Explicitly enter duplicates in pedigree.
#55 opened Jan 18, 2019 by OgnjenMilicevic
1
Running peddy with provided vcf and ped file
#54 opened Nov 28, 2018 by julien-kann
--Loglevel setting doesn't seem to work
#49 opened Aug 1, 2018 by vivianTan7
pca sklearn failure in latest development version
#45 opened May 30, 2018 by chapmanb
10
sex UNKNOWN
#43 opened May 24, 2018 by jeffverboon
1
IndexError: list index out of range
#39 opened Feb 12, 2018 by UmerMaqsood10
5
get warning when run peddy
#31 opened Sep 18, 2017 by liushuangmms
12
ouput contamination estimate
#25 opened May 3, 2017 by brentp
1
Half-siblings are treated as full siblings bug
#21 opened Jan 6, 2017 by oleraj
@brentp
7
ProTip! no:milestone will show everything without a milestone.