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bot = depth[depth > bot].mean() - 5 * depth[depth > bot].std()
/home/evag/.local/lib/python3.6/site-packages/numpy/core/_methods.py:140: RuntimeWarning: Degrees of freedom <= 0 for slice
keepdims=keepdims)
Traceback (most recent call last):
File "/data/scratch/user/evag/env-precisionhealth/bin/peddy", line 11, in <module>
sys.exit(cli())
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/click/core.py", line 716, in __call__
return self.main(*args, **kwargs)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/click/core.py", line 696, in main
rv = self.invoke(ctx)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/click/core.py", line 889, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/click/core.py", line 534, in invoke
return callback(*args, **kwargs)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/peddy/cli.py", line 209, in peddy
in ("ped_check", "het_check", "sex_check")]):
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/peddy/cli.py", line 43, in run
prefix=prefix, **kwargs)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/peddy/peddy.py", line 930, in het_check
plt.scatter(depth, ratios, c=cs, edgecolors=ecs, s=s)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/matplotlib/pyplot.py", line 2841, in scatter
None else {}), **kwargs)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/matplotlib/__init__.py", line 1589, in inner
return func(ax, *map(sanitize_sequence, args), **kwargs)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/matplotlib/axes/_axes.py", line 4490, in scatter
alpha=alpha
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/matplotlib/collections.py", line 883, in __init__
Collection.__init__(self, **kwargs)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/matplotlib/collections.py", line 128, in __init__
self.set_edgecolor(edgecolors)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/matplotlib/collections.py", line 728, in set_edgecolor
self._set_edgecolor(c)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/matplotlib/collections.py", line 712, in _set_edgecolor
self._edgecolors = mcolors.to_rgba_array(c, self._alpha)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/matplotlib/colors.py", line 286, in to_rgba_array
result[i] = to_rgba(cc, alpha)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/matplotlib/colors.py", line 177, in to_rgba
rgba = _to_rgba_no_colorcycle(c, alpha)
File "/data/scratch/user/evag/env-precisionhealth/lib/python3.6/site-packages/matplotlib/colors.py", line 238, in _to_rgba_no_colorcycle
raise ValueError("Invalid RGBA argument: {!r}".format(orig_c))
ValueError: Invalid RGBA argument: masked```
Suppressing the warning seems to cause issues downstream.
The text was updated successfully, but these errors were encountered:
Hi, I am getting an error:
The text was updated successfully, but these errors were encountered: