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I tried to setup log level to error, however it is still logging out the INFO.
/python -m peddy -p 4 --plot --prefix /Desktop/ceph-1463 --loglevel CRITICAL /Desktop/peddy-master/data/ceph1463.peddy.vcf.gz /Desktop/peddy-master/data/ceph1463.ped
2018-08-01 11:53:59 local peddy.cli[1537] INFO Running Peddy version 0.4.2
2018-08-01 11:53:59 local peddy.cli[1537] INFO ped_check
2018-08-01 11:54:02 local peddy.peddy[1537] INFO plotting
2018-08-01 11:54:03 local peddy.cli[1537] INFO ran in 3.3 seconds
2018-08-01 11:54:03 local peddy.cli[1537] INFO het_check
2018-08-01 11:54:05 local peddy.pca[1537] INFO loaded and subsetted thousand-genomes genotypes (shape: (2504, 2724)) in 0.8 seconds
2018-08-01 11:54:06 local peddy.pca[1537] INFO ran randomized PCA on thousand-genomes samples at 2724 sites in 0.3 seconds
2018-08-01 11:54:06 local peddy.pca[1537] INFO Projected thousand-genomes genotypes and sample genotypes and predicted ancestry via SVM in 0.0 seconds
2018-08-01 11:54:07 local peddy.cli[1537] INFO ran in 4.2 seconds
2018-08-01 11:54:07 local peddy.cli[1537] INFO sex_check
2018-08-01 11:54:07 local peddy.peddy[1537] INFO sex-check: 0 skipped / 814 kept
2018-08-01 11:54:07 local peddy.cli[1537] INFO ran in 0.4 seconds
The text was updated successfully, but these errors were encountered:
I tried to setup log level to error, however it is still logging out the INFO.
/python -m peddy -p 4 --plot --prefix /Desktop/ceph-1463 --loglevel CRITICAL /Desktop/peddy-master/data/ceph1463.peddy.vcf.gz /Desktop/peddy-master/data/ceph1463.ped
2018-08-01 11:53:59 local peddy.cli[1537] INFO Running Peddy version 0.4.2
2018-08-01 11:53:59 local peddy.cli[1537] INFO ped_check
2018-08-01 11:54:02 local peddy.peddy[1537] INFO plotting
2018-08-01 11:54:03 local peddy.cli[1537] INFO ran in 3.3 seconds
2018-08-01 11:54:03 local peddy.cli[1537] INFO het_check
2018-08-01 11:54:05 local peddy.pca[1537] INFO loaded and subsetted thousand-genomes genotypes (shape: (2504, 2724)) in 0.8 seconds
2018-08-01 11:54:06 local peddy.pca[1537] INFO ran randomized PCA on thousand-genomes samples at 2724 sites in 0.3 seconds
2018-08-01 11:54:06 local peddy.pca[1537] INFO Projected thousand-genomes genotypes and sample genotypes and predicted ancestry via SVM in 0.0 seconds
2018-08-01 11:54:07 local peddy.cli[1537] INFO ran in 4.2 seconds
2018-08-01 11:54:07 local peddy.cli[1537] INFO sex_check
2018-08-01 11:54:07 local peddy.peddy[1537] INFO sex-check: 0 skipped / 814 kept
2018-08-01 11:54:07 local peddy.cli[1537] INFO ran in 0.4 seconds
The text was updated successfully, but these errors were encountered: