Skip to content

Issues: yiluheihei/microbiomeMarker

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

48 Open 66 Closed
48 Open 66 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

CLR Normalization does not automatically handle zero values
#115 opened Apr 18, 2024 by qqwxp
Error when running run_aldex with kruskal or glm_anova for more than 2 level comparisons
#114 opened Mar 22, 2024 by LauGuaUuu
error in plot_cladogram function "TRUE/FALSE needed"
#113 opened Feb 21, 2024 by drelo
microbiomeMarker installation
#112 opened Feb 3, 2024 by fabio-marcelo
lefse analysis error
#111 opened Jan 17, 2024 by KOMALSKK
Multiple errors when following tutorial using my own dataset
#110 opened Jan 16, 2024 by lingvv
function or argument to subset taxa for plot_cladogram
#109 opened Dec 13, 2023 by ethanbass
1
When run run_lefse, get different results at species level using taxa_rank default and taxa_rank="species" seperatly
#108 opened Nov 28, 2023 by LAmethyst
error with run_lefse with 1 group and one subgroup: Error in purrr::map2_lgl(): i In index: 1
#107 opened Nov 27, 2023 by nadiaandreani
DESeq2
#105 opened Oct 6, 2023 by BlueK77
is there a way to calculate AUC confidence interval while running run_sl
#104 opened Sep 27, 2023 by nbutyrate
a
#103 opened Sep 27, 2023 by cafferychen777
suggestion: PINA and TINA
#102 opened Jun 19, 2023 by Luponsky
Error in check_rank_names(ps) : ranks of taxonimic profile must be one of Kingdom, Phylum, Class, Order, Family, Genus, Species
#101 opened Jun 6, 2023 by KatrinaLutap
1
how to interpret the result of plot_abundance
#100 opened May 28, 2023 by linux51
problems importing qiime2 files
#99 opened May 25, 2023 by mdtorohernando
1
Heatmap of microbiomeMarker object
#98 opened Apr 21, 2023 by cpavloud
No marker identified using run_ancombc() example
#97 opened Mar 7, 2023 by fconstancias
1
Error in run_test_multiple_groups function
#96 opened Feb 22, 2023 by W-xyue
The results of conda lefse and R run_lefse are different.
#95 opened Feb 1, 2023 by LeeJH5120
1
after run_lefse, plot_cladogram error
#94 opened Jan 27, 2023 by LeeJH5120
3
Applying the run_lefse command.
#93 opened Jan 26, 2023 by ricmedveterinario
3
import picrust2 failed: "cannot open compressed file"
#92 opened Jan 19, 2023 by azahorik
1
trying to normalize the microbial abundance data for beta diversity
#91 opened Jan 19, 2023 by libradaatencio
How to choose markers identified by different methods
#90 opened Dec 28, 2022 by DrYoungOG
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.