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umi-count

Here are 3 public repositories matching this topic...

berenslab / umi-normalization

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

dimensionality-reduction t-sne negative-binomial-regression normalization single-cell-rna-seq umi-count single-cell-analysis scrna umi-count-matrix negative-binomial-model negative-binomial gene-selection glm-pca

Updated May 6, 2022
Jupyter Notebook

nunofonseca / fastq_utils

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

validation ngs sequencing scrna-seq umi single-cell fastq high-throughput-sequencing barcodes 10x drop-seq fastq-files dge umi-count fastq-filterpair digital-gene-expression fastq-validation

Updated Mar 25, 2023
C

jessievb / IDseq

R-package to analyse data from the immuno-detection by sequencing (ID-seq) technology.

r rstudio sequencing barcode dna antibody umi dna-sequences fastq-files rpackage umi-count umi-sequence

Updated Jun 30, 2021
R

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