Annotation helper tool for the manual curation of transposable element consensus sequences
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Updated
May 22, 2024 - R
Annotation helper tool for the manual curation of transposable element consensus sequences
GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
Library-free horizontal transfer detection, with a focus on transposable element invasions
Transposable Element Finder - Detection of active transposable elements from NGS data
De novo repeat inference from long reads
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
Analysis and selection of primers for the study of transposable elements.
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
Bi-allelic genotyping of reference transposable elements
Transposon Insertion Finder - Detection of new TE insertions in NGS data
An R/C++ package for simulating the evolution of retrotransposons over time.
Genotyping of segregating mobile elements insertions
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
Supporting repository for article "Software Evaluation for 'de novo' Detection of Transposons"
A Python3 library for transposon fingerprinting
Pipeline to detect transposable elements (TEs) insertions polymorphism
Bioinformatics project
Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
SLURM-ready bash scripts to run the complete REPET pipeline
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