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Pinned

  1. GraffiTE GraffiTE Public

    GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

    R 90 3

  2. BarcodeAsm BarcodeAsm Public

    C++

  3. SeqLib SeqLib Public

    Forked from walaj/SeqLib

    C++ htslib/bwa-mem/fermi interface for interrogating sequence data

    C++

  4. dotfiles dotfiles Public

    Emacs Lisp

  5. bifrost_jaccard bifrost_jaccard Public

    Compute jaccard similarity matrix between colors in a bifrost compacted colored de Bruijn graph.

    C++

  6. panmethyl panmethyl Public

    Map Pacbio methylation data to genome graphs.

    Python