characterization of TEs from low-coverage genomic sequence data
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Updated
Jun 4, 2018 - Shell
characterization of TEs from low-coverage genomic sequence data
Scripts I have written as a graduate research assistant
A pipeline for identification and annotation of transposable element (TE) insertions using next generation sequencing (NGS) data.
Supplementary to publication "DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows"
Simultaneous analysis of genes and transposable elements (TEs) from 10X scRNAseq datasets derived from CD and NIBD samples using Alevin.
A simple bash pipeline for extension and edge polishing of transposable elements consensi.
Singularity image for PASTEC (transposable elements classification tool).
CLI tool for bioinformatic in-depth exploration of small RNA-seq data
Determine the sequence type of specific transposable elements in bacterial isolates.
Interrogating the influence of Transposable Element insertions on transcriptional dynamics
transposon and LD analysis for replicated experimental evolution fruit fly populations
Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte
Snakemake pipeline to analyze retrotransposable element 'omics data.
Evolutionary genomics of chromosomal inversions in Atlantic herring
a GALAXY-based pipeline for bioinformatic in-depth exploration of small RNA-seq data
A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis
Find and classify transposable elements using convolutional neural networks.
Useful python scripts for genomic analyses
TE annotation pipeline and analysis scripts for the insect mobilome publication by Petersen et al.
bs-ATLAS-seq analysis scripts
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