overwriTE dependencies include: mySQL, python3, R (tidyr, ggextra)
This figure below outlines the various components of a transcript that overwriTE will intersect with a TE insertion:
By intersecting overwriTE's intermediate .csv file with DEseq2 output, the potential influence of TEs can be quantified and visualized as seen below:
| Hexbin | Boxplot |
|---|---|
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