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structure-variation

Here are 5 public repositories matching this topic...

orangeSi / GSSplayground

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…

Updated Jul 12, 2020
HTML

Archieyoung / SVAN

A Structure Variantion Annotation Tool

annotation structure-variation

Updated Dec 29, 2018
Python

Shuhua-Group / SVanalysis_STARProtocols

A protocol for applying low-coverage whole-genome sequencing data in structure variation studies

population-genetics transcriptomics structure-variation

Updated Feb 28, 2024
Shell

orangeSi / Grainbow

show the genome structure variation or assembly error by pair-end or mate-pair reads

bioinformatics rainbow genome-assembly structure-variation reads-based

Updated Feb 14, 2019
Perl

geniusphil / run-annotsv

Annotation structure variant

annotation copy-number-variation structure-variation annotsv

Updated Aug 13, 2019
Shell

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