Shuhua-Group
- 49 followers
- Shanghai, China
- https://pog.fudan.edu.cn
- xushua@fudan.edu.cn
Pinned
Repositories
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- CHIP-mutation-calling-NGS-pipeline Public
This pipeline based on snakemake calls CHIP variants from next-generation whole-exome/genome sequencing of human samples and produces a purely filtered VCF file containing high confident CHIP mutations.
- AncestryPainterV2 Public
An updated version of AncestryPainterV1, a graphing tool to display ancestry composition and genetic difference.
- Genetic-characteristics-of-the-Han100K-initiative Public
We calculated pairwise FST and Ancestry components for each provincial population.
- Calculate.genetic.distance Public
This script can calculate the genetic distances of given variants based on their physical positions and genetic map files.
- SVanalysis_STARProtocols Public
A protocol for applying low-coverage whole-genome sequencing data in structure variation studies
- Construct-ancestral-genome Public
- PanGenome_VCF_PostProcess Public
A simple pipeline to process the VCF deconstructed from the VG pangenome graph
- ArchaicSeeker2.0 Public
ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest version of this series, ArchaicSeeker 2.0, has the following three notable improvements compared with the original version of this software. First, it can automatically determine the boundary of each introgress…
- CPC-graph-based-NGS-pipeline Public
A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
